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BASE 相關文獻
    (6974 閱讀)   友善列印

BASE是一個完全免費的網頁介面的基因晶片資料庫解決辦法,能夠處理大量的基因晶片數據,從生物實驗的資訊、基因晶片所產生的原始資料、原始影像,也提供了內建與外插的方式進行正規化、資料瀏覽與分析的工具。BASE是由瑞典Lund大學的研究人員開發而成,目前陸續都有更新版的發行,尤其是這個基因晶片分析環境平台是完全免費使用,安裝程式、原始檔、操作手冊等都可以經由網路免費取得,對於學術單位進行基因晶片分析研究有相當大的幫助。使用者僅需透過生物資訊系統網頁申請帳號核准後,即可使用BASE服務。[帳號申請]


Saal, L.H., Troein, C., Vallon-Christersson, J., Gruvberger, S., Borg, A., and Peterson, C. (2002) BioArray Software Environment (BASE): a platform for comprehensive management and analysis of microarray data. Genome Biol 3, SOFTWARE0003.

BASE software has been cited by following papers:

1.Smith CA, OMaille G, Want EJ, Qin C, Trauger SA, Brandon TR, Custodio DE, Abagyan R, Siuzdak G. (2005) METLIN: a metabolite mass spectral database.  Ther Drug Monit. 27(6):747-51 [連結至NCBI原始文獻]

2.Mainguy JP, Macdonnell G, Bund S, Wild DL. (2004) KMD: an open-source port of the ArrayExpress microarray database. Appl Bioinformatics. 3(4):257-60 [連結至NCBI原始文獻]

3.Collett JR, Cho EJ, Ellington AD. (2005) Production and processing of aptamer microarrays. Methods. 37(1):4-15 [連結至NCBI原始文獻]

4.Jonsson G, Bendahl PO, Sandberg T, Kurbasic A, Staaf J, Sunde L, Cruger DG, Ingvar C, Olsson H, Borg A. (2005) Mapping of a novel ocular and cutaneous malignant melanoma susceptibility locus to chromosome 9q21.32. J Natl Cancer Inst. 97(18):1377-82 [連結至NCBI原始文獻]

5.Karlsson G, Liu Y, Larsson J, Goumans MJ, Lee JS, Thorgeirsson SS, Ringner M, Karlsson S. (2005) Gene expression profiling demonstrates that TGF-beta1 signals exclusively through receptor complexes involving Alk5 and identifies targets of TGF-beta signaling. Physiol Genomics. 21(3):396-403 [連結至NCBI原始文獻]

6.Sherlock G, Ball CA. (2005) Storage and retrieval of microarray data and open source microarray database software. Mol Biotechnol. 30(3):239-51 [連結至NCBI原始文獻]

7.Rhee SJ, Walker WA, Cherayil BJ. (2005) Developmentally regulated intestinal expression of IFN-gamma and its target genes and the age-specific response to enteric Salmonella infection. J Immunol. 175(2):1127-36 [連結至NCBI原始文獻]

8.Vaquerizas JM, Conde L, Yankilevich P, Cabezon A, Minguez P, Diaz-Uriarte R, Al-Shahrour F, Herrero J, Dopazo J. (2005) GEPAS, an experiment-oriented pipeline for the analysis of microarray gene expression data. Nucleic Acids Res. 33(Web Server issue):W616-20 [連結至NCBI原始文獻]

9.Goesmann A, Linke B, Bartels D, Dondrup M, Krause L, Neuweger H, Oehm S, Paczian T, Wilke A, Meyer F. (2005) BRIGEP--the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Res. 33(Web Server issue):W710-6 [連結至原始文獻]

10.Menten B, Pattyn F, De Preter K, Robbrecht P, Michels E, Buysse K, Mortier G, De Paepe A, van Vooren S, Vermeesch J, Moreau Y, De Moor B, Vermeulen S, Speleman F, Vandesompele J. (2005) arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays. BMC Bioinformatics. 6(1):124 [連結至NCBI原始文獻]





  

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